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Computational Biophysics Workshop - Urbana, Nov. 8-12, 2004

Below is a list of the tutorials used at the summer school. Please click here to see a page with the updated versions of these tutorials.


• Molecular Graphics Tutorial
  An introduction to VMD and its capabilities
  
  
• Evolution of Protein Structure: Aspartyl-tRNA Synthetase
  A tutorial that uses structural and sequence alignment to learn about the evolution of tRNA synthetases.
  
  
• Molecular Dynamics Tutorial
  An introduction to NAMD and its capabilities
  
  
• Stretching Deca-Alanine Tutorial
  An introduction to IMD and SMD simulations with VMD and NAMD
  
  
• Nanotubes tutorial
  A tutorial simulating water diffusion and permeation through nanotubes
  
  
• Aquaporins tutorial
  A tutorial that uses Bioinformatics tools within VMD to find important structural features in aquaporins from evolutionary studies
  
  
• Parameterization of a Novel Residue
  Tutorial on determining new force field parameters to describe novel system components of a new molecule