VMD-L Mailing List

From: L. Michel Espinoza-Fonseca (mef_at_ddt.biochem.umn.edu)
Date: Thu Apr 27 2006 - 10:30:29 CDT

Hi Arneh,

You can try the "timeline"plugin of VMD. It invokes STRIDE to
calculate the secondary structure.

Enjoy!
Michel

2006/4/27, Arneh Babakhani <ababakha_at_mccammon.ucsd.edu>:
> Hello,
>
> I think there's a way to calculate the secondary structure of a protein
> (or the residues of a protein) along a trajectory, right? If so, how do
> I do that in VMD? Do I need to download/install a separate script?
>
> Thanks,
>
> Arneh
>