VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Mon Jan 30 2006 - 10:15:29 CST

Yes,
  Try b10 and let me know if you have any trouble reading the files
generated by the AMBER tools. The files the AMBER tools generate actually
don't conform 100% to the output generated by X-PLOR so I had to loosen
up VMD's parser to accept them. If you have any difficulties send me an
email with the file that you're unable to load and I'll take another look.

  John Stone
  vmd_at_ks.uiuc.edu

On Mon, Jan 30, 2006 at 02:15:56PM +0100, Vlad Cojocaru wrote:
> Hi Pavel,
>
> You should try the new beta version of vmd 1.8.4 (beta 10).... I wrote
> some time ago about the same issue and John told me recently that
> the b10 release should do the job ... However, I didnt have the time to
> test it yet ....
>
> Cheers
> vlad
>
>
>
>
> Pavel Macek wrote:
>
> > Hello
> > Is there any possibility to load Amber7(8) grid file (xplor format)
> > into VMD??
> >
> > average pdb and grif file were generated by ptraj script:
> >
> > trajin ../Traj/BS_3xWat.out.traj
> > grid water.grid 100 0.5 100 0.5 100 0.5 :WAT_at_O
> > average watgrid_avg.pdb pdb
> >
> > thank you
> >
>
> --
> Dr. Vlad Cojocaru
> EML Research gGmbH
> Molecular and Cellular Modeling Group
> Schloss-Wolfsbrunnenweg 33
> 69118 Heidelberg, Germany
> Phone: +49-6221-533266
> Fax: +49-6221-533298
> e-mail: Vlad.Cojocaru_at_eml-r.villa-bosch.de
> http://projects.villa-bosch.de/mcm/people/cojocaru/
> 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078