VMD-L Mailing List

From: Jason Smith (jason_smith_18_at_sfu.ca)
Date: Thu Nov 16 2023 - 15:28:49 CST

What about rendering multiple boxes but only having the molecules of interest visible?

Cheers,

-
Jason Smith
Post-Doctoral Fellow
Robert N. Young Lab, Simon Fraser University
8888 University Drive, Burnaby, BC, V5A-1S6
Canada

________________________________
From: owner-vmd-l_at_ks.uiuc.edu <owner-vmd-l_at_ks.uiuc.edu> on behalf of Patrick Charchar <patrick.charchar_at_rmit.edu.au>
Sent: Wednesday, 15 November 2023 9:27:39 PM
To: vmd-l_at_ks.uiuc.edu
Subject: vmd-l: Smoothing PBC jumps across PBC

RMIT Classification: Trusted

Hi all,

I’m visualising a membrane simulation and was wondering if there is a way to smooth the distracting jumps as lipids move across the PBC?

To be clear, I’m not talking about wrapping – my molecules are whole (no visual bonds break). I simply want to slow down the distracting visual effect at the box edges of having molecules constantly appearing and disappearing as they move from one side of the cell to another.

Thanks in advance,
Patrick