VMD-L Mailing List

From: Hasdemir, Hale Siir (halesh2_at_illinois.edu)
Date: Tue Jun 13 2023 - 17:00:25 CDT

Hello Kaur,

Unfortunately, I haven't found an easy way to achieve this. I tried saving the input structure file in .cms format and the trajectory in .dtr format using the "animate write file file_type filename ..." command, but Maestro doesn't seem to recognize the trajectory files unless they are written by Desmond.
Please find additional information about the animate command here: https://www.ks.uiuc.edu/Research/vmd/current/ug/node121.html

Additionally, I noticed that Maestro struggles with handling long trajectories and becomes extremely slow. In light of these challenges, I suggest reaching out to the Schrodinger help desk for assistance with your question.

Best,
Hale

From: owner-vmd-l_at_ks.uiuc.edu <owner-vmd-l_at_ks.uiuc.edu> on behalf of GAGANJYOT KAUR BAKSHI <gaganjyot.bakshi_at_s.amity.edu>
Date: Tuesday, June 13, 2023 at 16:44
To: vmd-l_at_ks.uiuc.edu <vmd-l_at_ks.uiuc.edu>
Subject: vmd-l: Converting namd trajectory to desmond trajectory

Hello guys,

I want to analyse my NAMD trajectories in maestro. How can i convert it in desmond or maestro format?
Please let me know

Thanks
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