VMD-L Mailing List

From: Gumbart, JC (gumbart_at_physics.gatech.edu)
Date: Tue Mar 28 2023 - 18:54:11 CDT

Ah, sorry, I see what you mean now. I don’t know how to address this directly, but on a macbook, you can increase the screen resolution. When I do that, I see it.

Best,
JC

On Mar 28, 2023, at 7:41 PM, Joel Subach <mjsubach_at_alumni.ncsu.edu<mailto:mjsubach_at_alumni.ncsu.edu>> wrote:

Hello JC thank you for your kind update:).

If this is true from the screenshot you attached where and or how would I edit the entries as the
tutorial Step 6 indicates below:

6 Update the dihedral parameters in the refine section as given in Table 2.

?

Thanks:)
Joel 🚀


On Tue, Mar 28, 2023 at 7:33 PM Gumbart, JC <gumbart_at_physics.gatech.edu<mailto:gumbart_at_physics.gatech.edu>> wrote:
You’re not missing any boxes. I attach an image of what I see.

As to your other error, I have no idea. I don’t think trying to put any file in that box should through an error. Maybe it’s a weird Mac M1 issue, but I don’t think anyone else has seen it.

Best,
JC

<Screen Shot 2023-03-28 at 7.28.55 PM.png>

On Mar 28, 2023, at 7:28 PM, Joel Subach <mjsubach_at_alumni.ncsu.edu<mailto:mjsubach_at_alumni.ncsu.edu>> wrote:

Hello JC thank you for your kind update:).

The EDIT ENTRY is only half visible and the boxes beneath for the edits are completely hidden, accordingly I think this is
a software issue unless you or someone else knows of a way for me to elongate this section.

Also I tried instead using the other VMD version VMD 1.9.4a57-arm64-Rev12 but the Opt Torsion Tab, NAMD Binary Input
will not allow me to input namd2 Unix Executable File, when I try I receive the error:

THE OPEN FILE OPERATION FAILED
The Open File Operation Failed to Connect to the Open and Save Panel Service (see screenshot attached)
(I will make a seperate post for this problem.)

Thanks if you know:)
Joel 🚀



On Tue, Mar 28, 2023 at 7:06 PM Gumbart, JC <gumbart_at_physics.gatech.edu<mailto:gumbart_at_physics.gatech.edu>> wrote:
Oh, sorry, I see the screenshot you sent earlier. You aren’t missing anything. The “edit entry” is just a little text but no entry boxes, just the kmax, etc.

Best,
JC

On Mar 28, 2023, at 7:04 PM, Gumbart, JC <gumbart_at_physics.gatech.edu<mailto:gumbart_at_physics.gatech.edu>> wrote:

Hi Joel,

Can you close other parts of the tab? I don’t think your resolution needs to be that high to show *just* the refine part, assuming all others are closed.

Best,
JC

On Mar 27, 2023, at 8:25 AM, Joel Subach <mjsubach_at_alumni.ncsu.edu<mailto:mjsubach_at_alumni.ncsu.edu>> wrote:

...and my VMD Version being used towards this problem is: VMD 1.9.4a57-x86_64-Rev12
accordingly should I try a different DMV Version to get passed this, I believe, software error?

Thanks:)
Joel 🚀

On Sat, Mar 25, 2023 at 5:14 PM Joel Subach <mjsubach_at_alumni.ncsu.edu<mailto:mjsubach_at_alumni.ncsu.edu>> wrote:
Hi I am on the ffTK Opt Torsions Tab, Refine Section and need to amend
my values, however, the Edit Entry Section is not visible. Is there a special
way that I may elongate this section to make my amendments? (See-screenshot).

Thanks if you know:),
Joel 🚀