VMD-L Mailing List

From: Josh Vermaas (vermaasj_at_msu.edu)
Date: Mon Oct 03 2022 - 14:36:53 CDT

Load the PSF first. The heuristics only are invoked if the first file to
be loaded doesn't have bond information in it.

-Josh

On 10/3/22 1:50 PM, Raman Preet Singh wrote:
> Dear VMD users and developers,
>
> When I view molecules in VMD, some of the bonds appear unrealistic. I
> understand that's because of the distance-based heuristics of VMD. Is
> there a way to override this so that only the bonds listed in psf file
> are shown?
>
> Thanks!
> RPS
>
> 

-- 
Josh Vermaas
vermaasj_at_msu.edu
Assistant Professor, Plant Research Laboratory and Biochemistry and Molecular Biology
Michigan State University
vermaaslab.github.io