VMD-L Mailing List

From: Alexander Adams (xadams_at_umich.edu)
Date: Thu May 26 2022 - 19:35:44 CDT

Hi Mike,

I did not originally run in text mode, but when I do I get the same
(incorrect) result.

Thanks for your help,
Alex

On Thu, May 26, 2022 at 5:29 PM CHARLES MCCALLUM <cmccallum_at_mac.com> wrote:

> Did you try ‘vmd -dispdev text -e …’?
>
> Best
> Mike
>
> Mike McCallum
> mmccallum_at_pacific.edu
> cmccallum_at_mac.com
> cmikemccallum_at_gmail.com
>
> On May 26, 2022, at 5:25 PM, Alexander Adams <xadams_at_umich.edu> wrote:
>
> 
> Dear VMD users,
>
> I've written a tcl script to align some ions to each of 3 protein chains
> and then save all of the ions as a merged file. The short story is that if
> I paste the script line by line into the Tkconsole it runs perfectly, but
> if I run via the command line (vmd -e align_coiledcoil_ions.tcl) it does
> not align properly. I was wondering if anyone had advice on what might be
> causing the problem, or how to diagnose it?
>
> For additional details, I've attached the script, and the specific problem
> is that only 1 of the 3 sets of ions align properly and the other 2 remain
> in the original position when I run it as a script instead of line by line.
> Please let me know if I can provide additional information.
>
> Best,
> Alex
> --
> (he/him/his)
> University of Michigan, Ann Arbor
> Ph.D. Candidate - Mayes Lab
> College of Engineering - Chemical Engineering
>
> 

-- 
(he/him/his)
University of Michigan, Ann Arbor
Ph.D. Candidate - Mayes Lab
College of Engineering - Chemical Engineering