VMD-L Mailing List

From: Leonardo Palmieri (leopalmieri1_at_gmail.com)
Date: Tue Apr 26 2022 - 14:35:41 CDT

BigDCD and scripts works well, some problems sometimes...

but the point is:

I'm interested in use extensions from Extension > Analysis, in graphic
mode, remotely accessing interactively a node in the computer where
the trajectory is stored.

I'm using compressed X11 forwarding to have the graphic VMD working
remotely, but the memory available per node cannot store the entire
trajectory and the VMD crashes when it run out of memory.

That's the reason.

Thanks!

2022-04-26 16:17 GMT-03:00, John Stone <johns_at_ks.uiuc.edu>:
> Can you tell us why the bigDCD script isn't a choice for you?
>
> Best,
> John
>
> On Tue, Apr 26, 2022 at 04:12:18PM -0300, Leonardo Palmieri wrote:
>> Hi everybody,
>>
>> Is there a way to analyse a trajectory without loading the entire
>> trajectory file in RAM's computer?
>>
>> I know that is possible to do choosing a sub set of frames or choosing
>> a larger stride or scripting using BigDCD, but all of those is not a
>> choice for me. Is there another way?
>>
>> Thanks in advance!
>>
>>
>> --
>> att
>>
>> Leonardo Palmieri
>
> --
> NIH Center for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349
> http://www.ks.uiuc.edu/Research/vmd/
> 

-- 
att
Leonardo Palmieri
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