VMD-L Mailing List

From: Jason Smith (jason_smith_18_at_sfu.ca)
Date: Thu Aug 12 2021 - 10:47:28 CDT

Is it just for visualisation purposes? VMD has draw functions. https://www.ks.uiuc.edu/Research/vmd/current/ug/node127.html

https://www.ks.uiuc.edu/Research/vmd/vmd-1.9.1/ug/node128.html

Note that line doesn't behave well with being pretty sometimes. A series of cylinders, cones, or spheres makes for some nice dashed line styles that interact nicely with materials and light-based graphics.

graphics<https://www.ks.uiuc.edu/Research/vmd/vmd-1.9.1/ug/node128.html>
www.ks.uiuc.edu
graphics

Cheers,

-
Jason Smith
Post-Doctoral Fellow
Robert N. Young Lab, Simon Fraser University
8888 University Drive, Burnaby, BC, V5A-1S6
Canada

________________________________
From: owner-vmd-l_at_ks.uiuc.edu <owner-vmd-l_at_ks.uiuc.edu> on behalf of Dawid das <addiw7_at_googlemail.com>
Sent: Thursday, 12 August 2021 6:59:35 AM
To: vmd-l_at_ks.uiuc.edu
Subject: vmd-l: Add specific h-bonds

Dear All,

I know how to visualize h-bonds using HBonds drawing method, however,
I would like to manually add an h-bond representation. Is it possible?
I tried using "Add/Remove bonds", but it "creates covalent bonds".

Best wishes,
Dawid Grabarek