VMD-L Mailing List

From: Mustafa Tekpinar (tekpinar_at_buffalo.edu)
Date: Thu Dec 31 2020 - 15:43:35 CST

Hi,
I have a script that might be useful:
https://urldefense.com/v3/__https://github.com/tekpinar/CMB-Scripts/blob/master/vmd_scripts/rmsf.tcl__;!!DZ3fjg!qo_PEIdKrDs8XvWMljoq76oHK8CtIs-jZ9AR7vkr7hWrjj3fJYZlYiszxzh23N90TQ$

Best,
Mustafa Tekpinar

On Thu, Dec 31, 2020 at 8:01 PM John Stone <johns_at_ks.uiuc.edu> wrote:

> Have you looked at the VMD tutorials or User's Guide examples
> of trajectory analysis scripts? You should be able to use
> one of the examples to guide the analysis you want to perform.
>
> Best regards,
> John Stone
> vmd_at_ks.uiuc.edu
>
> On Tue, Dec 08, 2020 at 02:39:33PM +0300, Mi Yang wrote:
> > Dear Colleagues,
> > Does anyone know about scripts for extracting RMSF values from dcd
> > trajectory?
> > Dr Shabbir
>
> --
> NIH Center for Macromolecular Modeling and Bioinformatics
> Beckman Institute for Advanced Science and Technology
> University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> http://www.ks.uiuc.edu/~johns/ Phone: 217-244-3349
> http://www.ks.uiuc.edu/Research/vmd/
>
> 

-- 
Mustafa Tekpinar, PhD
Structural Dynamics of Macromolecules Unit
Pasteur Institute
25-28 Rue du Dr Roux
75015 Paris France