VMD-L Mailing List

From: Peter Freddolino (petefred_at_umich.edu)
Date: Mon Nov 09 2020 - 14:34:37 CST

Because of how the cionize namespace is set up, you need to use

*::cionize::cionize *

Best,
Peter

On Mon, Nov 9, 2020 at 2:30 PM Atreyo Pal <atreyo.pal_at_yale.edu> wrote:

> Hi everyone,
> Does anyone please know how to use the "cionize plugin" for VMD (on MacOS)?
> I need to neutralize a siRNA molecule and I'm really confused about
> finding it. I've tried:
>
> package require cionize
> > 1.0
> cionize -p 4 -i cionize.in -f Molecules/siRNA.pdb
> > invalid command name "cionize"
>
>