VMD-L Mailing List

From: Kliuchnikov, Evgenii (Evgenii_Kliuchnikov_at_student.uml.edu)
Date: Thu Sep 12 2019 - 18:11:16 CDT

Hello VMD users,

I do analysis of normal modes for membrane protein and I want to fix the coordinates of transmembrane domain of this protein somehow to simulate the membrane. I was using ProDy in order to get normal modes for protein without any constraints. Is it possible to constrain some coordinates or increase force constants for some atoms using NMWiz?

Best regards,
Evgenii Kliuchnikov