VMD-L Mailing List

From: Dallas Warren (dallas.warren_at_monash.edu)
Date: Sun Jun 02 2019 - 17:57:21 CDT

How about making a 3d probability surface, in say Gaussian Cube or
gOpenmol plt format, of the correct size, then translate around until
in the correct position?

Some other suggestions -
https://www.ks.uiuc.edu/Research/vmd/mailing_list/vmd-l/8556.html

Catch ya,

Dr. Dallas Warren
Drug Delivery, Disposition and Dynamics
Monash Institute of Pharmaceutical Sciences, Monash University
381 Royal Parade, Parkville VIC 3052
dallas.warren_at_monash.edu
---------------------------------
When the only tool you own is a hammer, every problem begins to resemble a nail.

On Sun, 2 Jun 2019 at 13:58, Abolfazl Musavi <ab.musavi1990_at_gmail.com> wrote:
>
> Dear all,
>
>
>
> I want to draw several cubic boxes to separate different regions in the simulation box. I want their sides to be semi-transparent and with different colors. I do not want to draw a cube by lines because then there will not be any side surfaces.
>
>
>
> I would be appreciated if anyone could tell how to do that in VMD.
>
>
>
> Regards
>
> Abolfazl