VMD-L Mailing List

From: Neena Susan Eappen (neena.susaneappen_at_mail.utoronto.ca)
Date: Wed Apr 24 2019 - 12:44:39 CDT

Hello VMD users,

How to track H-bonds at a particular location (say amide carbonyl of residue n) as a function of time from a MD trajectory using VMD? My goal is to understand the dynamics of H bonds at that particular location.

Many thanks,

Neena Eappen
Graduate Student
Jockusch Lab<http://www.chem.utoronto.ca/wp/jockusch/>, U of T