VMD-L Mailing List

From: Sasthi Charan Mandal (sasthi.phys_at_gmail.com)
Date: Sat Sep 08 2018 - 02:19:13 CDT

Dear all,
          I want to calculate the hydrogen bonds between protein and dna
atomwise in vmd. So I used vmd for this calculation but vmd gives the
hydrogen bonding in residue wise for an example residue-132-side with
dna-11-side. But vmd does not give the hydrogen bond between atoms i.e.
which atom in protein making hydrogen bond with which dna atom. So if you
give any suggestion of how to calculate hydrogen bonds atomwise, it would
be very much helpful.Thanks in advance.