VMD-L Mailing List

From: Mani Kandan (manikandand5110_at_gmail.com)
Date: Mon Aug 27 2018 - 04:31:18 CDT

Dear all,

               When I solvating my system for large dimensions, I am
getting following errors in the vmd.
psfgen) Info: writing pdb file sin_sol_spce.pdb
psfgen) Info: pdb file complete.
psfgen) clearing structure, preserving topology and aliases
atomsel: writepdb failed.

I am using following comment for solvating purpose:
package require solvate
solvate sin_channel_charges_modified.psf sin_channel_charges_modified.pdb
-z 1000 +z 1000 -s W -o sin_sol_spce

               Kindly, help me in these regard.

With Regards,

MANIKANDAN D