VMD-L Mailing List

From: Fotis Baltoumas (fbaltoumas_at_biol.uoa.gr)
Date: Fri May 04 2018 - 11:16:45 CDT

Hello,

There is a VMD plugin that does just that:

http://www.ks.uiuc.edu/Research/vmd/plugins/hbonds/

(Extensions -> Analysis -> Hydrogen Bonds)

Fotis Baltoumas

On 05/04/2018 07:09 PM, Qasim Pars wrote:
> Hi,
>
> Any answers?
>
>> On 20 Apr 2018, at 16:27, Qasim Pars <qasimpars_at_gmail.com> wrote:
>>
>> Dear users,
>>
>> I need to calculate the number of hydrogen bonds per residue between protein and ligand. If you have such a script (tcl, python, bash...script) that does it using VMD, could you please send it to me?
>>
>> Thanks in advance
>>
>> --
>> Qasim Pars 

-- 
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Fotis A. Baltoumas
Bioinformatics Postgraduate Programme
Section of Cell Biology and Biophysics
Department of Biology, National & Kapodistrian University of Athens
Panepistimiopolis, Athens 157 01, GREECE
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email : fbaltoumas_at_biol.uoa.gr
http://biophysics.biol.uoa.gr
http://bioinformatics.biol.uoa.gr
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