VMD-L Mailing List

From: Stefano Guglielmo (stefano.guglielmo_at_unito.it)
Date: Thu Apr 12 2018 - 09:03:51 CDT

Dear vmd users,
I'm not sure whether this is an issue for vmd list: but I generated a
hydrated system with amber force field (AmberTools16), but when visualizing
the system in VMD water molecules appear as triangles, as if there were
also a bond between the two hydrogen atoms.
Does anyone has an idea about the reason?

Thanks
Stefano 

-- 
Stefano GUGLIELMO PhD
Assistant Professor of Medicinal Chemistry
Department of Drug Science and Technology
Via P. Giuria 9
10125 Turin, ITALY
ph. +39 (0)11 6707178