VMD-L Mailing List

From: Harish Srinivasan (harishlglk1992_at_gmail.com)
Date: Thu Apr 06 2017 - 01:37:29 CDT

Hi,

I am trying to construct a psf file from a given pdb file. I am using an
rtf file for topology of the molecule. After the generating psf file, the
autopdb file generated has a really messed up structure.

I have attached the initial pdb & rtf files and the final generated autopdb
and autopsf files here.

What could be the reason behind this ?

Thank you
Harish