VMD-L Mailing List

From: maria khan (mariabiochemist1_at_gmail.com)
Date: Fri Jan 13 2017 - 15:44:31 CST

Dear VMD users,,
i am a new user of VMD.
im analysing results of MD simulation done by Gromacs when i want to draw
the RMSD plot,,it gives an empty result showing no graph curve,,how it can
be solved..i attached the file that u may understand my problem.
SEcondly how i can calculate protein ligand interaction?
how i calculate binding energy?
How i calculate H-bod ?
Ptential energy.
Thanks in advance.
Maria khan.