VMD-L Mailing List

From: Ana Celia Vila Verde (acavilaverde_at_gmail.com)
Date: Thu Mar 03 2016 - 09:30:18 CST

something like

type OW (if you have particles of type OW)
name Cl (if you have particles of name Cl)
index 1 (if you want to get the radial distribution function around a
particular atom; sometimes useful, for example, to get the radial
distribution function of particles of a given type around a particular
protein atom. In this case one of the selections would be "index 1" and
the other "type OW", for example).

On 03/03/16 16:04, Richard Wood wrote:
> What is the syntax necessary to run the Radial Pair Distribution
> Function g(r) plugin under VMD? more specifically, what text goes
> into the boxes labeled Selection 1 and Selection 2?
>
> Ricard