Re: Re-center membrane protein

From: Ramon Mendoza Uriarte (
Date: Fri May 14 2021 - 12:18:13 CDT

I would suggest looking at VMD's PBCTools Plugin:,can%20be%20used%20within%20VMD%20without%20further%20preparation.
From: <> on behalf of Ropon-Palacios G. <>
Sent: Friday, May 14, 2021 10:02 AM
To: KS UIUC <>
Subject: namd-l: Re-center membrane protein

Hello namd users,

I am running a simulation of a protein in membrane, which after 200 ns of simulation goes to a corner of the membrane and stays there for a long time, I want to perform the analyzes and I want to put it back in the center, how could I do this, without the links crossing the pbc box?.



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