Placed random molecules into Box

From: Ropon-Palacios G. (
Date: Fri Mar 05 2021 - 16:05:22 CST

Dear namd users,


I’ve a questions:


I have a system that is an membrane protein solvated and ionized, an like add ligand placed random in extracellular side to an given concentration (10 micromolar):


Q1: How can calculate number of ligands to add into given concentration?

Q1: How placed ligand random ?






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