Post processing NAMD trajectory

From: Kodituwakku,Dimuthu Nirmani (
Date: Sun Sep 13 2020 - 13:08:14 CDT

Hi all,

I want to renumber residues of my trajectory sequentially. Currently, I have numbered my 2 monomers of my dimer starting from 1-587. Is there a way to number residues from 1-1174 in my trajectory?

Also does using the VMD RMSD trajectory tool to calculate RMSD for the entire protein get affected by having residues numbered from 1-587 for the 2 monomers?

Thank you,


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