Problem with using autoPSF on TMCL lipid

From: salehesam101 . (
Date: Fri Dec 16 2016 - 10:11:47 CST


I am attempting to develop a bilayer with the composition of that f E.coli.
It seems that anytime I attempt to run autoPSF, i run into a problem with
the composition of one of the lipids I am using, namely TMCL (from
Charm-Gui membrane generator). It seems that none of the topology files I
uploaded from the toppar folder I was given from Charm-Gui is recognized by
autoPSF for this particular lipid. All other lipids were recognized, but
not TMCL.

Is this an issue with autoPSF or the topology file?

How can I solve this?

Saleh Al-Khalifa

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