How to continue RMSD of previous production simulation

From: Farhad Jahanfar (
Date: Fri Dec 02 2016 - 12:21:36 CST

Dear NAMD users

I want to run my production simulation in separate runs.
For example, instead of 10 ns simulation i want to run it in 5 simulations
in 2 ns.
I know how to use restart files and continuing, but my problem is RMSD of
each simulation which does not starts from where the previous run ends, and
i couldn't put RMSDs together like there is no stop between runs.
I think it must be common problem for long time simulations like >1000 ns.
Is there any script that could help?

Best regards

Farhad Jahanfar

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