(no subject)

From: Santanu Santra (santop420_at_gmail.com)
Date: Mon Oct 31 2016 - 23:22:58 CDT

Hi all,
            I am doing simulation on a protein containing two chains that
are not connected by any covalent bond. During my equilibration two chains
reside on two sides of cubical box in few snaps and then again they reside
both together as hey are and PBC condition is also on . Using NAMD and for
visualization by VMD , how can I avoid these situation and can get always
both together till unfolding.
           Please reply.

Thanks in advance!!!!!!!!!!!!!!!
Santanu Santra
Research fellow
NIT Rourkela, 769008
Odisha, India

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