Shear Stress modelling in NAMD

From: James Starlight (
Date: Sun Sep 11 2016 - 05:12:26 CDT

Dear Namd users!

I wonder to ask some methodological details regarding protocol of the
Shear Stress modeling via TCL interphace implleemented in NAMD.
Particularly I am interesting whether this protocol is based on
Steered MD and how the PMF could be calculated here along the
mechanistic gradient which applied on the system to produce shear
stress ?

Thanks for help!


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