bond energy high

From: Ipsita Basu (
Date: Wed Feb 03 2016 - 05:15:35 CST

I have a query regarding lipid bilayer simulation. My namd input file is
attached herewith. After completion of minimization, the bond energy become
very high,but the simulation run continues without any warnings and the
system is perfectly okay when visualized in vmd.
Can anyone tell me how to get rid off this issue? Please help

Ipsita Basu
Research Fellow
c/o : Dr. Chaitali Mukhopadhyay
Rajabazar Science College
92 APC Road
Kolkata - 700009

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