Re: vmd-l: Re: VMD-NAMD and PDB element column

From: Victor Ovchinnikov (
Date: Mon Dec 14 2015 - 09:47:54 CST

Jim et al.,
 From looking at the c40 CHARMM source code, if "PATCH" is supplied then
dihedrals and/or angles are to be removed and autogenerated after a
patch is applied. Let me know if you want more details.

Also, going through the same source code, I did not see CHARMM reading
the element column from the topology file. Everything past the mass
appears to be ignored.

On 12/14/2015 10:04 AM, Jim Phillips wrote:
> Also, anybody know what "AUTOGENERATE ANGLES DIHEDRALS PATCH" is
> supposed to mean in top_all36_na.rtf? (Specifically, what does
> "PATCH" indicate?)

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