From: Fransiska Kurniawan (fransiskakurniawan_at_yahoo.com)
Date: Sat Jun 20 2015 - 17:56:52 CDT
Dear NAMD user,
I want to ask, how to create psf file if we have ligand file and already get the topology and parameter file from cgenff?I tried to use the automatic psf builder in VMD, it is failed. then I tried to make the psf file manually (using the script) and it also failed.Here attached the pdb file of my ligand and also the topology and parameter file that I got from cgenff.
Anyone can help me please?
Thank you for your help.
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