Topology for lysine bouding in Epsilon

From: Jean-Patrick Francoia (
Date: Mon May 05 2014 - 12:11:23 CDT


I'm new to NAMD, and as far I undestood, if I want to minimize a
structure with "non traditional residues", I need a topology file for those.

I'm trying to minimize a homopolymer of lysine, but the lysines can
either be stitched by their alpha amine or their epsilon amine, giving a
branched polymer. Is there a topology file for that already built ?


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