AW: Coordinates of Carbon atoms on Graphite

From: Norman Geist (
Date: Wed Sep 25 2013 - 08:35:15 CDT

I have no idea how you layers look like, but for example by using coordinate
atom selections like "y > 0". By labeling one atom (pressing "1") u can get
a reference coordinate for the dimension you need in your case. Afterwards
use "save coordinates" with the selection worked. Otherwise, show me you


Norman Geist.


Von: Mihaela Drenscko []
Gesendet: Mittwoch, 25. September 2013 13:56
An: Norman Geist
Betreff: Re: namd-l: Coordinates of Carbon atoms on Graphite




So far, all pdb files for graphite show four layers.I only need two layers,
not four. How can I get VMD to show two layers only?




On Wed, Sep 25, 2013 at 1:49 AM, Norman Geist
<> wrote:

Why not, but why heteronymous?


Norman Geist.


Von: [] Im Auftrag
von Mihaela Drenscko
Gesendet: Dienstag, 24. September 2013 18:47
Betreff: namd-l: Coordinates of Carbon atoms on Graphite




I have to run a namd simulation for the interaction between a nano-sized
water droplet and graphite substrate. Can I use VMD to display the
coordinates of atoms in two heteronymous layers of hexagonal graphite?


Thank you,



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