Re: AW: H-bonds cutoff angle criterian. .

From: Martin, Erik W (
Date: Mon Jan 21 2013 - 01:07:11 CST

It's actually not that intuitive. I'm pretty sure the angle in question is measured from 180 (in other words 180 is 0)... But yes, probably more a VMD question

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On Jan 20, 2013, at 11:48 PM, "Norman Geist" <<>> wrote:

Isn’t it a VMD question?

There’s a manual about it, too. I guess the angle was measured donor-acceptor-hydrogen. So if you want 120, set 120 and see if you get the expected view.

Norman Geist.

Von:<> [] Im Auftrag von Anurag Sharma
Gesendet: Sonntag, 20. Januar 2013 17:54
Betreff: namd-l: H-bonds cutoff angle criterian

I have a problem in representing the HBonds. If I want to represent cutoff angle = 120 then what cutoff angle should I enter in VMD graphic representation. is it 120 or 60.


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