From: AYTUG TUNCEL (ATUNCEL_at_KU.EDU.TR)
Date: Thu Nov 30 2006 - 16:44:39 CST
I have a two chain (receptor = 452, ligand = 451 residue) protein explicit solvent, 5ns simulation. When I look to the .out file I see that even the electrostatic energy is very negative (-351813.6281) the vdw energy is very high, it is 25662.5684. These values are from the last frame. Is this kind of high vdw value normal or is it too high? or is it related to the size of the system. thanks in advance.
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