Re: vmd-l: one residue rmsd

From: John Stone (
Date: Tue May 02 2006 - 11:00:59 CDT

  You can calculate RMSD for any collection of atoms you like using
the 'measure rmsd' command:

You may need to use 'measure fit' and '$sel move' if you need to align
structures first.


On Mon, May 01, 2006 at 06:49:02PM -0400, snoze pa wrote:
> Dear Users,
> I want to calculate rmsd value for only one residue in my 1ns simulation.
> Anybody has script to calculate rmsd of a single residue using vmd. The
> overall rms value is working fine but i don't know how to calculate rmsd of
> a single residue, any help.
> thanks in advance
> snoze

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