From: John Stone (johns_at_ks.uiuc.edu)
Date: Tue May 02 2006 - 11:00:59 CDT
You can calculate RMSD for any collection of atoms you like using
the 'measure rmsd' command:
You may need to use 'measure fit' and '$sel move' if you need to align
On Mon, May 01, 2006 at 06:49:02PM -0400, snoze pa wrote:
> Dear Users,
> I want to calculate rmsd value for only one residue in my 1ns simulation.
> Anybody has script to calculate rmsd of a single residue using vmd. The
> overall rms value is working fine but i don't know how to calculate rmsd of
> a single residue, any help.
> thanks in advance
-- NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801 Email: johns_at_ks.uiuc.edu Phone: 217-244-3349 WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
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