density of water molecules in a water sphere

From: Margaret Shun Cheung (
Date: Mon Apr 03 2006 - 13:56:42 CDT

Dear NAMD users,

I wonder how to justify or determine the water density in a water sphere
with a solvated protein. I got a system padded with water molecules
(instructed by the tutorial) but that seems unlikely to secure the water
density in the simulations... If there is another way around it, please
share me with your insights. Thank you very much.

Margaret S. Cheung,
Ph. D. Postdoctoral Fellow,

Room 2117 Tel: (301) 405-4892
Inst. for Phys. Sci. & Tech. Fax: (301) 314-9404
University of Maryland
College Park, MD 20742-2431 email:

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