Aligning structures

From: Richard Wood (
Date: Thu Mar 09 2006 - 21:20:45 CST

Hi all,
 Is there a way to align all the frames of a dynamics calculation using VMD? I know that one can open two or more molecule files and do an alingment on them, but I need to know if I can do this with a dynamics trajectory having 100 frames or more. I need to align all the structures and then calculate RMSD's. Any help will be most appreciated.
Richard L. Wood, Ph. D.
Computational Chemist
Cockeysville, MD 21030

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:41:43 CST