RE: running NAMD2 in parallel

From: Gan, Yong \(UMC-Student\) (
Date: Mon Oct 10 2005 - 22:34:32 CDT

I follow Leonardo's method. But I got

Charmrun> charmrun started...
Charmrun> using ./nodelist as nodesfile
Charmrun> rsh (node3:0) started
Charmrun> rsh (node4:1) started
Charmrun> node programs all started
Charmrun> error 0 attaching to node:
Timeout waiting for node-program to connect


-----Original Message-----
From: Leonardo Sepulveda Durán []
Sent: Mon 10/10/2005 10:03 PM
To: Gan, Yong (UMC-Student)
Subject: Re: namd-l: running NAMD2 in parallel
I dont use NFS, so I have to create first the same directory where i
have my inputs in every node (only the folder, it is not necesary to
copy the files). When I dont do that, a "Cannot propagate this
current directory" error is evocked. I know, is not the most elegant
way to do it, nevertheless it works. If someone knows wich is the
problem IN MY CASE, please let me know.


On 10/10/05, Gan, Yong (UMC-Student) <> wrote:
> Hello,
> I tried to run namd2.6b1 on 2 nodes. I was told that
> /bin/sh: line 35: cd: /home/yg8p2/popc160: No such file or directory
> and the log file said
> Charmrun rsh(node3.0)> Cannot propagate this current directory:
> Charmrun rsh(node3.0)> /home/yg8p2/popc160
> Charmrun rsh(node3.0)> Exiting with error code 1
> My nodelist is
> group main
> host node3
> host node4
> Could you tell me how to fix it?
> Thanks a lot!!!
> Yong

Leonardo Andres Sepúlveda Durán
Graduado de Bioquimica
Universidad de Chile
Manuel Antonio Maira 987 depto. # 302
Codigo postal:  752-0249

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