From: Dong Luo (us917_at_yahoo.com)
Date: Thu May 12 2005 - 11:52:42 CDT
The default dielectric constant is 1.0 which means a
vacuum environment. I tried change it to 80 when I run
my peptide in water box with periodic boundary. The
single peptide chain soon turned to totally unfolded
after 9 frames (4.5ps). Is it reasonable or I can't do
Any suggestions on setting dielectric constant?
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