molecules distorted

From: Samuel Flores (
Date: Tue Mar 22 2005 - 15:35:03 CST

Howdy all,

Many thanks for answers to previous questions. I am now visualizing the
results of an MD run of a protein in a water sphere. A few of the atoms are
distorted, though, as if thrown completely out of place at an early time
step. Is there some sort of close-contact removal run I should be doing?
I've already tried reducing the time step.

Any help would be appreciated.


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