From: bo baker (bo.bybaker_at_gmail.com)
Date: Wed Oct 12 2005 - 15:27:23 CDT
Hi, Thanks for your suggestion.
I try the command from my account as well as the 'adm' account. But I
got the message saying that 'namplot: permission denied'. Here is how
---- [mriv209-01:~/desktop] bo% cd desktop [mriv209-01:~/desktop] bo% ./namdplot tcsh: ./namdplot: Permission denied. ---- Then I try the admister account: ---- adm% /Applications/NAMD_2.6b1_MacOSX-PPC/namdplot TEMP pbr1.log tcsh: /Applications/NAMD_2.6b1_MacOSX-PPC/namdplot: Permission denied. ---- Do I do something wrong? Thank you for your advice. Bo On 10/11/05, Robert Brunner <rbrunner_at_uiuc.edu> wrote: > You need to tell the OS where namdplot is, since its not it one of > the directories it normally searches. Use "./namdplot" instead of > "namdplot" so that it know to find namdplot in the current directory. > > Robert > > On Oct 11, 2005, at 6:56 PM, bo baker wrote: > > > Hello: > > > > Thank you very much for your suggestions. Yes, I use Mac OS X. I > > downloaded the 'namdplot' script from the NAMD/utilities. And I have > > the .log file in the same directory. Then I try to call 'namdplot > > TEMP pbr1.log' as the tutorial suggested. But the computer can't > > recognize 'namdplot' command. I guess that some commands need to be > > added before 'namdplot'. Here is how I did: > > > > [mriv209-01:~/desktop] bo% namdplot > > tcsh: namdplot: Command not found. > > [mriv209-01:~/desktop] bo% namdplot TEMP pdr1.log > > tcsh: namdplot: Command not found. > > > > I don't have experience to wrtie a program in unix. Can anyone suggest > > me how to modify the 'namdplot' script , so I can use it for the Mac? > > I don't have 'xmgrace' in the computer. I would like to write it into > > text file. So I can convert the data with other graph program later. > > > > I have included the 'namdplot' script as an attachment. Your help will > > be very appreciated. > > > > Bo > > > >
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