aquaporin question

From: Samuel Flores (
Date: Thu Jun 16 2005 - 15:39:11 CDT

I saw a really cool animation of water going through the aquaporin at the
NAMD workshop. Does anyone know where I could get the .psf and .dcd files
to show people in my lab? I'm doing a presentation tomorrow on vmd.


-----Original Message-----
From: [] On Behalf
Of Luis Rosales
Sent: Thursday, June 16, 2005 4:09 PM
To: Samuel Flores;
Subject: Re: namd-l: vmdtext?


vmdtext is just an alias that you shouls create,

in cshrc you add to your .cshrc:

 alias vmdtext 'vmd -dispdev text'

in bash, you aff to your .bashrc:

alias vmdtext='vmd -dispdev text'

Hope this helps,


---------- Original Message -----------
From: "Samuel Flores" <>
To: <>
Sent: Mon, 13 Jun 2005 12:41:12 -0400
Subject: namd-l: vmdtext?

> Hi all,
> I'm trying to work through one of the workshop tutorials. At one
> stage, I'm instructed to run 'vmdtext' to add hydrogens to a
> structure. However the operating system just tells me: 'vmdtext:
> command not found'. Does vmdtext have to be installed separately?
> Many thanks
> Sam
------- End of Original Message -------

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