From: Pijush Ghosh (pijush.ghosh_at_ndsu.edu)
Date: Thu Apr 28 2005 - 13:44:35 CDT
Hello NAMD Friends.
I have a question regarding solvation of protein. When we do solvate in
VMD it surrounds the protein with a box of water, now the density we get is
a default one. Can I regulate the density of water, that is if I want to
build my system with fewer number of water molecules can I really do that,
if yes then how? Can anybody comment on the density of water one should use.
Appreciate your contribution in advance.
Department of Civil Engineering
North Dakota State University
Fargo. ND. 58105. USA
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