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NAMD User's Guide
Version 3.0alpha
R. Bernardi, M. Bhandarkar, A. Bhatele, E. Bohm, R. Brunner, R. Buch, F. Buelens, H. Chen, C. Chipot, A. Dalke, S. Dixit, G. Fiorin, P. Freddolino, H. Fu, P. Grayson, J. Gullingsrud, A. Gursoy, D. Hardy, C. Harrison, J. Hénin, W. Humphrey, D. Hurwitz, A. Hynninen, N. Jain, W. Jiang, N. Krawetz, S. Kumar, D. Kunzman, J. Lai, C. Lee, J. Maia, R. McGreevy, C. Mei, M. Melo, M. Nelson, J. Phillips, B. Radak, J. Ribeiro, T. Rudack, O. Sarood, A. Shinozaki, D. Tanner, P. Wang, D. Wells, G. Zheng, F. Zhu
July 24, 2022
Theoretical Biophysics Group
University of Illinois and Beckman Institute
405 N. Mathews
Urbana, IL 61801
Description
The NAMD User's Guide describes how to run and use the
various features of the molecular dynamics program NAMD.
This guide includes the capabilities of the program, how
to use these capabilities, the necessary input files and
formats, and how to run the program both on uniprocessor
machines and in parallel.
NAMD development is supported by National Institutes of Health
grant NIH P41-GM104601.
NAMD Version 3.0alpha
Authors: R. Bernardi, M. Bhandarkar, A. Bhatele, E. Bohm, R. Brunner, R. Buch, F. Buelens, H. Chen, C. Chipot, A. Dalke, S. Dixit, G. Fiorin, P. Freddolino, H. Fu, P. Grayson, J. Gullingsrud, A. Gursoy, D. Hardy, C. Harrison, J. Hénin, W. Humphrey, D. Hurwitz, A. Hynninen, N. Jain, W. Jiang, N. Krawetz, S. Kumar, D. Kunzman, J. Lai, C. Lee, J. Maia, R. McGreevy, C. Mei, M. Melo, M. Nelson, J. Phillips, B. Radak, J. Ribeiro, T. Rudack, O. Sarood, A. Shinozaki, D. Tanner, P. Wang, D. Wells, G. Zheng, F. Zhu
Theoretical and Computational Biophysics Group, Beckman Institute, University of Illinois.
©1995-2018 The Board of Trustees of the University of Illinois.
All Rights Reserved
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