Class PubSynchBean

java.lang.Object
  |
  +--java.awt.Component
        |
        +--java.awt.Container
              |
              +--java.awt.Panel
                    |
                    +--PubSynchBean

All Implemented Interfaces:

javax.accessibility.Accessible, java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable

public class PubSynchBean

extends java.awt.Panel

implements java.io.Serializable

This Bean allows users to save the current JMV state, and load that state later.

See Also:

Serialized Form

Nested Class Summary

class	PubSynchBean.DrawAtoms Holder class for atom drawing info
class	PubSynchBean.PubSynchListener ActionListener class for the buttons

Nested classes inherited from class java.awt.Panel

java.awt.Panel.AccessibleAWTPanel

Nested classes inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

javax.media.j3d.Canvas3D

m_canvas Canvas for image drawing

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

PubSynchBean()
Constructor

Method Summary

void	addPropertyChangeListener(java.beans.PropertyChangeListener l) Adds a PropertyChangeListener to the PropertyChangeSupport, to send property changes on mouse events (button clicks, etc.)
java.lang.String	getSynchFilename() Gets the filename of the last published molecule
void	guiInit() Initialize user interface
void	publish(java.lang.String fileName) Publishes the current JMV state to the specified file It writes the filename, representation, colorscheme, gradient, and the matrix coordinates of the molecule transformation.
void	removePropertyChangeListener(java.beans.PropertyChangeListener l) Removes a PropertyChangeListener from the PropertyChangeSupport
void	setParams(javax.media.j3d.TransformGroup trans, Molecule molec, java.lang.String filename, int rep, int colorScheme, int gradient) Sets the parameters for publishing
void	setSynchFilename(java.lang.String filename) sets the filename of the molecule
void	synch(java.lang.String filename) Loads a file with different atom representations, colors, etc.

Methods inherited from class java.awt.Panel

addNotify, getAccessibleContext

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getInsets, getLayout, getListeners, getMaximumSize, getMinimumSize, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paint, paintComponents, paramString, preferredSize, print, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, removeNotify, setFocusCycleRoot, setFocusTraversalKeys, setFocusTraversalPolicy, setFont, setLayout, transferFocusBackward, transferFocusDownCycle, update, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphics, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getToolkit, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isOpaque, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, repaint, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, reshape, resize, resize, setBackground, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, setVisible, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

m_canvas

public javax.media.j3d.Canvas3D m_canvas

Canvas for image drawing

Constructor Detail

PubSynchBean

public PubSynchBean()

Constructor

Method Detail

setParams

public void setParams(javax.media.j3d.TransformGroup trans,
                      Molecule molec,
                      java.lang.String filename,
                      int rep,
                      int colorScheme,
                      int gradient)

Sets the parameters for publishing

Parameters:

trans - the TransformGroup affecting the Molecule

molec - the Molecule currently drawn in JMV

filename - the file of the Molecule drawn

getSynchFilename

public java.lang.String getSynchFilename()

Gets the filename of the last published molecule

setSynchFilename

public void setSynchFilename(java.lang.String filename)

sets the filename of the molecule

Parameters:

filename - the new name of the pdb file

guiInit

public void guiInit()

Initialize user interface

publish

public void publish(java.lang.String fileName)

Publishes the current JMV state to the specified file It writes the filename, representation, colorscheme, gradient, and the matrix coordinates of the molecule transformation.

Parameters:

fileName - the file to write to

synch

public void synch(java.lang.String filename)

Loads a file with different atom representations, colors, etc.

Parameters:

filename - the name of the file to load.

addPropertyChangeListener

public void addPropertyChangeListener(java.beans.PropertyChangeListener l)

Adds a PropertyChangeListener to the PropertyChangeSupport, to send property changes on mouse events (button clicks, etc.)

Overrides:

addPropertyChangeListener in class java.awt.Container

Parameters:

l - the PropertyChangeListener to add the PropertyChangeListener to

removePropertyChangeListener

public void removePropertyChangeListener(java.beans.PropertyChangeListener l)

Removes a PropertyChangeListener from the PropertyChangeSupport

Overrides:

removePropertyChangeListener in class java.awt.Component

Parameters:

l - the PropertyChangeListener to remove the PropertyChangeListener from