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The ribosome is a molecular machine ubiquitous in all living cells
and translates genetic information into proteins. Proteins are made
of twenty different amino acids, strung in a linear sequence. The
amino acids are coded for by the genes in DNA, but for the purpose of
protein synthesis genes are transcribed into a working copy, a
messenger RNA. The latter is translated by the ribosome into proteins
with the help of transfer RNAs, which bring the individual amino acids.
There is a transfer RNA for each of the twenty amino acids. Much progress has been made regarding the static structure of the ribosome, transfer RNA, and nascent protein components (see also the Dec 2009 and Jan 2009 highlights Managing the Protein Assembly Line and Open Sesame). Now
researchers are looking into the inner workings of the whole system
combining various experiments and computational modeling using
NAMD and
VMD.
The combination yielded unprecedented detailed views of the
ribosome in action as
reported recently,
namely how a dynamic part of the ribosome helps guiding transfer RNAs on
their way out of the ribosome, and explains why transfer RNAs behave
differently on their journey, depending on if they start
synthesis of a protein or if they elongate a protein.
More on our ribosome
website.