From: Mark Zottola (
Date: Tue May 29 2007 - 11:31:44 CDT

I have a trajectory from an MD run stored as a MOL2 file. I can read inthe
mol2 file but VMD only sees one frame. If I read in a MOL2 file having only
the initial frame of the MD run then try to "load data into molecule" by
reading in the MOL2 file containing the entire trajectory, VMD thinks there
are only 2 frames to the simulation. Would this problem be circumvented if
I could convert the MOL2 file to an SD file?

Thanks for any pointers you can give.