VMD-L Mailing List

From: preeda (preeda_at_hlab.iis.u-tokyo.ac.jp)
Date: Tue Apr 17 2007 - 09:44:30 CDT

Dear John and other VMD users,

Now I perform IMD simulation by running NAMD and VMD in real-time and
use a PHANTOM to apply a force on a protein through a tool devices
provided in VMD option.

Do you know how can I obtain a force data that I applied during the IME
simulation and also trajectory data of a PHANTOM?
I would like to analysis the force curve and trajectory data of a
PHANTOM during the IME simulation.

If anyone knows on how to obtain these data, any suggestion will be
greatly appreciated.

Thanks,

Preeda